Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs2363630 chr12:53357713 T/A 4.59E-5 101 16.58 12.68 13 KM Plot
SKCM rs2363631 chr12:53357710 G/A 4.59E-5 101 16.58 12.68 13 KM Plot
SKCM rs2363634 chr12:53354683 A/G 4.59E-5 101 16.58 12.68 13 KM Plot
SKCM rs2404972 chr15:76602212 G/A 0 101 14.5 20.67 6.58 KM Plot
SKCM rs2604454 chr15:59098732 C/A 0.000104 98 14.8 20.47 13.25 KM Plot
SKCM rs262279 chr2:180869145 G/A 3.03E-5 100 15.13 14.23 9 KM Plot
SKCM rs274960 chr9:23567768 A/G 1.15E-7 101 14.2 18.12 8.6 KM Plot
SKCM rs28395875 chr11:64024048 G/C 1.33E-10 99 14.75 19.85 6.83 KM Plot
SKCM rs28563961 chr5:554498 C/G 0 99 15.3 13.4 6.33 KM Plot
SKCM rs28576812 chr5:554515 G/A 0 99 15.3 13.4 6.33 KM Plot
SKCM rs2934667 chr14:51153692 C/T 2.96E-5 96 6.8 13.8 15.47 KM Plot
SKCM rs2959652 chr11:64520942 G/T 5.64E-7 101 8.8 15.73 14.7 KM Plot
SKCM rs3015473 chr14:51154010 A/G 4.76E-5 99 6.8 13.72 15.57 KM Plot
SKCM rs3078205 chr19:48687051 ACC/A 7.8E-5 100 15.13 14.8 11.73 KM Plot
SKCM rs34115345 chr19:48667843 C/A 6.73E-5 101 15.38 14.8 11.73 KM Plot